NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10479246

Scaffold Ga0114994_10479246


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10479246 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037580Metagenome167Y
F071646Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_104792461F071646N/APETIVKGRWEVSMDMERSTLGELEHPWYQGITLYTISRGAEHNTKSDQRYLDCLDLAKFV
Ga0114994_104792462F037580N/AEHFWEMFLIRRRDDRGSEDRSCTIDNGCSELVERCRYVTGGMEFELTPLPSTTDVSFEYNAPTPFGKHHSSSSLNFQMNFARSRQLSYRWCDLLLCSAPLMMVYNVTPRFHGCSNSTSVDHSMSMETSQRPFTIVSGAFLGNVLDQEPRRPWERRSIGNHRQQLF*
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