NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10618757

Scaffold Ga0114994_10618757


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10618757 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F019024Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_106187571F019024AGGAGMKLYKLEASNWETFYGTMENPIARDVTTIAQTPSCDAFLLLSKDAQDSLELLSTVPSGFDFTYCQEWGLTINDA
Ga0114994_106187572F000060N/AAAALEEVGNLKNQAKVSKLKHLQNGGNGLEYEILELKAEILEAKSHDATTKEAFELNTKEIVILKKLLKELYVIAEPTRIEGYSDEEMWEANQANEFTVNIGREIQAEMIANGRPSPAKLKNAMSNPFTWNALKDIGLVPKETKILVGNINPHDKIKLIGVEDEVI*
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