NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114952_1099780

Scaffold Ga0114952_1099780


Overview

Basic Information
Taxon OID3300009421 Open in IMG/M
Scaffold IDGa0114952_1099780 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1017
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024709Metagenome204Y
F031346Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0114952_10997801F031346N/AGLTTVANIVMDSTWIPTIQHVHVSGDGVIHADVSWTDSTTAAAIKEVTSVAWLKSTLSSMTRNLAYDPQLALRHFPRLNRVYRPYTYVWPKSAQATLIGSDPSVPVLPGGFLVPPVQHLDSVVRRLVTNTEEETVVKPQWTNTSWYATAIRACFEYKVLLSTDARDTNPTTWAMMACHFLHRYDDKEKN*
Ga0114952_10997802F024709N/AVESALAIIGQAVARAVDGDAKYERFAQHLEAVQPEEAAAPTRSNAQSVLRRRGHADGGASGWVLPSARNTLARSVSQESGASVGFRHTCRRDSRRRSGEKKE*
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