NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115548_1024231

Scaffold Ga0115548_1024231


Overview

Basic Information
Taxon OID3300009423 Open in IMG/M
Scaffold IDGa0115548_1024231 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2409
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010277Metagenome306Y
F019561Metagenome229Y
F024420Metagenome206N
F031295Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0115548_10242313F024420GGAGGMTIYEELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHNIKLYDAMTFKEILTLCRDHNVGGRFK*
Ga0115548_10242315F010277AGGAGMSRLKDKLLEVELFVGEKLQDLTNEQVIKEVRKHFGSQMFVDHAKNVLDEFQQDVNFERLQERSQPW*
Ga0115548_10242316F031295GAGGMVRAEEKLHGVISRLTDEYNGYNIRKRIKKSDLQNLVHDLEVVDAELHDLKLPPITDDIKLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLVFNLGVNALHNHKNDWEDR*
Ga0115548_10242318F019561GGAGGMTDKFTKPILRNIRESLEKNNFMQYGMTVNGGKEIVNFTLGNCSFDEDQAKFQLIVTFKGNSVEDIAKKKQKEDLEHYAKYFDIDLERKHPRYTLVGYKIKSRKLPWIITDNQKSGEYIISDDQAKKLFGKQDVDTFLKGQREAQANG*
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