NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114997_10024524

Scaffold Ga0114997_10024524


Overview

Basic Information
Taxon OID3300009425 Open in IMG/M
Scaffold IDGa0114997_10024524 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4069
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010829Metagenome / Metatranscriptome298Y
F078613Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114997_100245241F078613N/AKGVSIIHDYTYGIYTTNGDKTIRYLSTALSSHTNFQQSFKDNLKKNVNPCDILYKVRKGKITTPKGYETVGYEVEIAEDMEAYIAEKDRPSPFQEGNWIIPRIIAEGLTDMDRLPCNLIDLYTEMKERFPSIEEKKIKEYAILIGEGGVVDLRKAKEETW*
Ga0114997_100245243F010829AGGAGMGNLADHRRLREAQGLYKEDPGTGTYTKDELDYIPFLGNNPSEEKPAVYTARFKVTGGVIELEAKRSGGKLYLTCLADEKHNRALFECVERFVAAIFDGTAREISEAQPEDSELMKLKKHIDQLEKENADHIMTLETLKDIMK*
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