Scaffold Ga0114997_10046522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114997_10046522

Scaffold Ga0114997_10046522

Overview

Basic Information
Taxon OID	3300009425 Open in IMG/M
Scaffold ID	Ga0114997_10046522 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2807
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	79
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011254	Metagenome / Metatranscriptome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100465223	F011254	N/A	MQITIYKNWKVQHKEVVVQYKDLSREITTTCHTFDLPARWHKITINLARTEIHRIDIGNEDIKHCLNSGVNTDNGYEIWLHGNPAEYFSRIAECIAHDDLLRFKNLKNKYLITESWNEMLEGDFVPTSVKQFFARGEGPYWYHKEDFHNLPYVEYDGDVDTDIELDEDLQFTDTKFYGQGQCKSLKPQPVLPTIRLDQIKNQKLRNTMRQFGFTDILQMQYVELQPNSVLPVHRDDFTYEDGKSIIDGPTQLYCVLSGDSKGIKFKFKNAGLIDVSKPIFINNRRFVHSLVYTGDIPRGVLLAYGIRQSK*

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