NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114997_10253690

Scaffold Ga0114997_10253690


Overview

Basic Information
Taxon OID3300009425 Open in IMG/M
Scaffold IDGa0114997_10253690 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)989
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)79
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056070Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0114997_102536902F056070AGAAGVINLQHVAQMQQLCLNQGNNKAQNVDTQGVGEVSGGCRKTVLGVAKVVQFRIILSYLRRMCTKLAKCRHPSTPCRHPADTPPVDNLWLNNLWYKLLIRDRYHLFTNADTLLDFSANVIKKNINTLLGVDN*
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