Scaffold Ga0114915_1001171

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114915_1001171

Scaffold Ga0114915_1001171

Overview

Basic Information
Taxon OID	3300009428 Open in IMG/M
Scaffold ID	Ga0114915_1001171 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11452
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (18.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026881	Metagenome / Metatranscriptome	196	Y
F046384	Metagenome	151	Y
F055737	Metagenome	138	Y
F056147	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100117114	F026881	N/A	MKRKEFTTKERFKVLEKTVAILYVAIEKLNKRADVVDQFLTKATKDYKDE*
Ga0114915_10011712	F055737	N/A	LVKETRKAISWCFKNNIKIIIKPLSKTGKPDAVIEIHREGSIQTGKEVYRQDKKLHNKIEELYLYLHKTLR*
Ga0114915_100117122	F046384	N/A	MITDLHSFKNMQIDTLQKEVAKANKKILNLETFIFELCEEDCPVAYKDIVKKEILNG*
Ga0114915_100117126	F056147	N/A	MNIEVNITRNEDQSEYYQLRLSTYKESIEGKFTKEDLRYLIQQIDNEIV*

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