NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114915_1003848

Scaffold Ga0114915_1003848


Overview

Basic Information
Taxon OID3300009428 Open in IMG/M
Scaffold IDGa0114915_1003848 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6092
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F008577Metagenome / Metatranscriptome331Y
F029758Metagenome / Metatranscriptome187Y
F058909Metagenome / Metatranscriptome134Y
F059342Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0114915_100384810F058909AGAAGMIDLSNTEINVLMVALDHMEEEISDLMSGRTLRGNMWKERLDACSSIRTKLQKLC*
Ga0114915_100384812F029758AGGAGMRKDDRLNAVEHIWYAESDRWIYIERYASGYLGLNFMQGDEYDYFKKSWCEMDRGTSEFYETMKTDLIKLRVEMSELEFIDKVMWIYFEAKTRQ*
Ga0114915_100384814F001217N/AMSRTKFNGFEKYFIQTALKHAIEEAEKDVLAAEADGNRSIYAPGYFTMVGSEIINKVNSMTLKKFQD*
Ga0114915_100384816F059342N/AMSNTKYNGYTDFPTWKVFHETLSNITFDKYVTPEELKEISLDVVLFGFKMQFGSHLVEEFARVFIESADFQDIADAINNDIR*
Ga0114915_10038489F008577N/AMKLTWEEIKDIANRLDEIIGDNFHEAIYDTILEREGNEELEVSDEDILQIKEQLRRIL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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