NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114915_1016686

Scaffold Ga0114915_1016686


Overview

Basic Information
Taxon OID3300009428 Open in IMG/M
Scaffold IDGa0114915_1016686 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2691
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F004988Metagenome / Metatranscriptome416Y
F090883Metagenome / Metatranscriptome108Y
F092702Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0114915_10166863F004988AGGVPKLVETICPRCDGNGYIRIIPVVATVGDTGTEADCPMCEEEFIHMGMKVTAHNGYVLLPIKDTRKNIEGGRESKTKWSGETLPEVGK*
Ga0114915_10166865F090883N/AMEADIMTIALKMRRINNCRDMLTQAQCPRMQAMWKRNYEKLLKNYWEEQGERILRAAGEIH*
Ga0114915_10166866F092702N/AMVVNFRYLDRLNNTIDTMWHEIEQVKDTNIKLYQFIEEHENDFK*
Ga0114915_10166867F000720GAGGMILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFNKNIEDIITGVPIDKKQRMLSTDPYASQMKE*
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