NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114915_1077382

Scaffold Ga0114915_1077382


Overview

Basic Information
Taxon OID3300009428 Open in IMG/M
Scaffold IDGa0114915_1077382 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1023
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012624Metagenome279N
F012723Metagenome278Y
F038412Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0114915_10773821F012624AGGMLTNYKGNSAHLKALKLARIEQHSADAVVYLSLSLGVVAVFTFLNWAMI
Ga0114915_10773824F012723N/AMSDDDIKAYFDGSNITLAELSAMTGKSIKQLKTILMGGK*
Ga0114915_10773825F038412N/AKKAVKAGHRIAVAFNTKGLASDELQISHKLSSFDKTDLRHLDGAVVGSLTRKGSSKADRAADNLQSNSFFVTMANLVAFTDIIAVGG*

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