Scaffold Ga0120401_1028055

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120401_1028055

Scaffold Ga0120401_1028055

Overview

Basic Information
Taxon OID	3300009431 Open in IMG/M
Scaffold ID	Ga0120401_1028055 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0137033, Gp0137034
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8061
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	900
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099327	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120401_102805511	F099327	GAGG	MAEEGYIQGTSGEEISLLVDGIKIMALQNLSWKASQAKSVIRGAGYSKPHAMGRGPKEYEVDFEVKELNKAVIEEAVNSPKSSESQIKTFTVGEQEFSDLLDLRNATVLIMYPAKNNAQRIIRFLGFEFTDVEGGFAVDDESVGRKLSGIAMDAEGLV*

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