NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115545_1005952

Scaffold Ga0115545_1005952


Overview

Basic Information
Taxon OID3300009433 Open in IMG/M
Scaffold IDGa0115545_1005952 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5612
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054888Metagenome / Metatranscriptome139N
F069473Metagenome / Metatranscriptome124N
F087135Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0115545_10059522F054888AGGAGMDFFEEKSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAFTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGSRGVKFDSGFSSEVPEFDFVAWKPRPVEFAIPAWANDEDVPAPVAESPVEKTVVTDDDIPF*
Ga0115545_10059525F087135AGGAGMTQYTDLIKLQALKNDVYEWAKRVKSHYMQTRYGDGFYEITYNDDSREVMYNDGTVKTTDSPHNFEQLVRLYEQDHGEQW*
Ga0115545_10059526F069473N/AMESLDMKTAIKNKRNKLTERTTTQAIWVDSEIHQLLKEHQVMSRSSRSLGELAAHYIKLGICDARSNDK*
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