NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115545_1025824

Scaffold Ga0115545_1025824


Overview

Basic Information
Taxon OID3300009433 Open in IMG/M
Scaffold IDGa0115545_1025824 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2394
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015117Metagenome / Metatranscriptome257Y
F066645Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0115545_10258242F015117N/AVLHSSLNKKEDPTMAKFTMDMVLEYAKVFEENRDMGSDLNNAAKKAMKHNGQYVVNAYLTSPEQEQQLLEGGLDPKPMGNERIKQGNDFGIGRYIKLSRMHDHVMTFSDKNGKQTEVDFGGKPAVVNLTNGVENKAWWSFENDGTLGNGTKAKVQFETYASGAGVRLIAIGVTDHVAWEDNSIPSEDDQLFMVG*
Ga0115545_10258243F066645AGGAVRVTIDFQFDKEFDGYDGSSSASRDEVEDLYTMAQFITDAMKGAGFSYVVDVGFEKDDGNIVFGEF*
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