Basic Information | |
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Taxon OID | 3300009434 Open in IMG/M |
Scaffold ID | Ga0115562_1036485 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2313 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010473 | Metagenome / Metatranscriptome | 303 | Y |
F019630 | Metagenome / Metatranscriptome | 228 | N |
F028771 | Metagenome / Metatranscriptome | 190 | N |
F030048 | Metagenome / Metatranscriptome | 186 | N |
Protein ID | Family | RBS | Sequence |
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Ga0115562_10364853 | F010473 | N/A | MNLIRYEIKAGFFKGFLFGVRHYHFYDEEIYEEDIVLYIGIFQIILTLIYEK* |
Ga0115562_10364854 | F019630 | N/A | MAKARKNIVIKNCNYKAQQYCFKNGFLIYPEPYGNMFKIYCNRIKGNYYMKGQQFNKEQSSQAIWDLYTKIYNYELNKI* |
Ga0115562_10364855 | F030048 | GAG | MAISPHCKSLENVAYKSCIDTYFSQRDKKDIVDYWLYLFNEHRFCEAKGVEKALELIDIYEEWNGKS* |
Ga0115562_10364857 | F028771 | N/A | FLKGNIGESLWLSELSNTHTDIEKAPNKRFYDWDIKAKYNGREVTYEVKYDSKGYYYADRYNRPVNIYIEFQNTRKDEDSGIIASKATYYVYILKSLDDVETAYVFDRLELLEYLKNNDIKVKGNSFGGDNNAKGWIPPLGNLEHLILKKIKLK* |
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