Scaffold Ga0115008_10128492

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115008_10128492

Scaffold Ga0115008_10128492

Overview

Basic Information
Taxon OID	3300009436 Open in IMG/M
Scaffold ID	Ga0115008_10128492 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1860
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Candidatus Methylopumilus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016497	Metagenome / Metatranscriptome	246	N
F022105	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_101284923	F022105	AGGAG	MKENLTVDYHITNTKYPIYRVSEWDKYQQYNKTAKRYVRQMPWFKFYARELLQQRTFVMLEPENFKFLILIMCHASQDDGYLVFEDLAFHFRGILDEDTLKNNLEFLEEQRFINQVNSSEFIDSRAFGWHRNNNKDTKSENTKFHSDNFEQIVN*
Ga0115008_101284924	F016497	N/A	MKPTKLENKKLDEITVREMMLTPLGCKIVAESCIKVLAEQIGKWSEEYPEQRENFQADVEVLWRTLGLLNKCDFLFKDPEQKEEDLAA*

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