NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115031_1004701

Scaffold Ga0115031_1004701


Overview

Basic Information
Taxon OID3300009439 Open in IMG/M
Scaffold IDGa0115031_1004701 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10042
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040447Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0115031_100470112F040447N/AMSVPLLPGTDYTDVHVPNIGGPKGYIRSQARKIGRTAKNMKFSFGGTLVTNGKEPLKVFSWLRKFVKACNDNDVSEGMGLYLIPNFLAGDAETRFTRNLPGSDIAGGQGSLGYFPAAVNWLLSTYTEPHASGLAQDKFSWAALVDNEGADAFAARLRSLAELCGNIHSEGTINQQLIQGLPENLRTDAFVYNTAKQSYQQLSTYGAGKYRAAKDVMALASRRSPGGSLRKWQTSTGPRGLSVNQLHSPWEEDNTATYDTGAVLPSGTPGFRTAGGAPYARQEAPTGPPLCYMCWTRGHWVSDCKILTDKQRDLVKAARSTFLRQRNAGAGAVADRTSVVALVWDDLLGGAESTRTEGGDVPPVAPPATGRRGAENA*
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