NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115031_1005277

Scaffold Ga0115031_1005277


Overview

Basic Information
Taxon OID3300009439 Open in IMG/M
Scaffold IDGa0115031_1005277 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9419
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013269Metagenome272Y
F019271Metagenome230Y
F024709Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0115031_100527713F024709N/AVRDVRIRAPRGAARSAVAHAWVDQVTGLRRAVKRADSEGVESALAIIGQAVVCAVDGDANYKRFAQNLESIQPEQVAAPTRFNAQSVLRRSAYDNGGPSGGAPPSARNARARSVSQ*
Ga0115031_100527714F019271N/AMRWIDYGLRDDTWEPLENLPRNLVVRFFRKRKKFVPGYEWQTPTQRSRRQAGLTTVVSIVMDPMWLPTIQHIHVTGDGIIHADVSSTDSTTPAAIKEVLPVAWLKSTLLSMTRSYAYDPQLFFRHLPRLNRVYGPYTYAWPKSAQATLVGSDPSVPTLPKGFLVRPAQHLDSVFRRLVTTTEEATVVIPQWTNTSWYASAIRACFEYEVLLSTDAKDSNRTPWAMLACHFLHRYDDKLKN
Ga0115031_100527715F013269AGGAGMITDDMVILDVNVNDKRGGIRVCVDDHEGPNGFALQLVLPNVVGRVYVVADHDVRIAGYYLMVALTFVTLLRLTQGLDYDGDLLAQAGLELAFAS*
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