Scaffold Ga0115031_1006472

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115031_1006472

Scaffold Ga0115031_1006472

Overview

Basic Information
Taxon OID	3300009439 Open in IMG/M
Scaffold ID	Ga0115031_1006472 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8389
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Maine, USA
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055389	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115031_10064729	F055389	GAG	MLGPCMRVMRSCLPFLATGAGVNVVRSSVLRTNWMAYVEKMTTLPRIRDANNNRLVIKYAIHSFVDTGGVRLLDRFLVSDNLSVPFIHGTDLIEQNIEAILPRLRKIVWQEHVRCTEELPRRTPILACLNDSAWDRHWKDKPARVRACKQVRVNRHQEK*

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