NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115031_1014500

Scaffold Ga0115031_1014500


Overview

Basic Information
Taxon OID3300009439 Open in IMG/M
Scaffold IDGa0115031_1014500 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex4_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5129
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023776Metagenome208Y
F028401Metagenome191Y
F036067Metagenome170Y
F061490Metagenome131N
F073006Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0115031_101450010F023776N/ALVIRSDEEPLSVEDVPQLEDSPHDAKAFSLRGGVVLLCSSESSAPISDRMKQFARFLLEEGTTNFFGACVNVDDELPIGLWQGEYRWAQ*
Ga0115031_101450011F036067N/AMVYKPGASHHLPDFLSRASTVAPPDDIHDDTPCLALAETANGLMTERYTGTDKPEPVEFNDGVEAQETYDDCVAMTKRVELGTAKAFFRDEHHALYRRAPYGNQLVI
Ga0115031_10145003F061490AGGAVIRPANSRFKALLDYRTYFLIRRQLTYTPEEAQRSHRLNKRLDGAFHGQQPFTGALPLGIFTLLTTIRRACDAAGLTHGQALPLMVFRLAGNAKMAFSGALNSTLGRQRYAIRTYGDAVNWLLSKYAIHATMANAYQDIITMKQQDNEAPTAFGHRVETQCDLLNGLFDIQDVMDIFITGLSDLVQAHVRVLNDQFPDRTLSETVATAQMYWDGTNKLR*
Ga0115031_10145007F028401AGGMRYSFSVLPANWMAYAEKLTTLPRILDANNNRLVTKYDIHLYVDTGGVRLFDRFLISDNLSVSCILGTEFIEQNIEGIFPRLRKIVWQEHVRCTEELPRPTPILACLNDSAWDRHWQDRPARVRA*
Ga0115031_10145009F073006GGAMLQSIHVLVVHVQLPGAVNVSEVLDLIGEPRALFQVEGNPGFAETVKSRVNVSDVLFLVSGKMMTSSK*
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Institute for Fundamental Biomedical Research
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