Scaffold Ga0115031_1015452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115031_1015452

Scaffold Ga0115031_1015452

Overview

Basic Information
Taxon OID	3300009439 Open in IMG/M
Scaffold ID	Ga0115031_1015452 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4918
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Maine, USA
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009942	Metagenome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115031_10154528	F009942	AGGAG	MSGPICTECARTARKRRIGALVFLRLSENPEENLDNSLLWATLPHETTEKGRISQENGESRFCTDLAVREPMARRRYALSSCLMLF*

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