NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115007_10042305

Scaffold Ga0115007_10042305


Overview

Basic Information
Taxon OID3300009441 Open in IMG/M
Scaffold IDGa0115007_10042305 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2840
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8669Long. (o)-3.2286Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008155Metagenome / Metatranscriptome338Y
F024888Metagenome204Y
F025386Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0115007_100423052F024888AGGAMKIDLKNIHKIAGEMVDGIEQKEMEGKTPDEYAQEKGFSTWMEYAAWSRHTGGDYQMMVYALKSKWKEQDPEEFARQKKIQGDQSLREHSYINLPPEAWPTSVPNKNDFASNFIGNKKKKWQPVHKSNFTADQLEKVYDDFGVGGTQVEYRW*
Ga0115007_100423054F025386AGGMETSYETETKNNTANTWASFWYMIFVTSLIVATWGEPDLIDAMIYHLSDGHYK*
Ga0115007_100423055F008155GGAMKNKKDTQQLATVVYIHAMRKEIEEEVKSKYSKRIDYLVHANNELMKELEQCESEIVTVEKECYGRGV*
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