NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115557_1179841

Scaffold Ga0115557_1179841


Overview

Basic Information
Taxon OID3300009443 Open in IMG/M
Scaffold IDGa0115557_1179841 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003592Metagenome / Metatranscriptome478Y
F018076Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0115557_11798411F003592GAGGMRFKKYYKDILSLIASLSLLASVYFANHYDIKQLYREFVGLRLKVQVQEKLIDSLEDRVNLLSDQNQELLIDLAEHNETRGKENSMLLERLQDLEYKIEVMSMKSTISSNGKVFNDRFEFTDKQVNRVGQYETNGQVLVAWKDDYLATKKVNVNTIGEINVVPKIKKLDKDKFVSYIDESYLGGITIRGQGEVQQIEPPRNQF
Ga0115557_11798412F018076N/AGRPRTSTTFLGLFRRETTTTEVRVVVELKNKKTGQVVSGNGTGTIDRDISSTGFQINEELPFDRSELGGALKEAIGNAVQEIL*
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