Scaffold Ga0114945_10000060

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114945_10000060

Scaffold Ga0114945_10000060

Overview

Basic Information
Taxon OID	3300009444 Open in IMG/M
Scaffold ID	Ga0114945_10000060 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	58816
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (58.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Beatty, NV
Coordinates	Lat. (^o)	36.96	Long. (^o)	-116.72	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031968	Metagenome	181	N
F032211	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114945_1000006016	F032211	AGGAGG	MFESMFFTLWLMKASMPEGCAVTGTVFYSPEQTFALLHTNCLIEIQRRDHWIIMTSPQWVVAVEIPRIPGKHQFTYTWGSPWALFDAGGTSGEWVVVAVGHRSGA*
Ga0114945_1000006056	F031968	N/A	VRYQQLRRAILQLLYERAVETPQSLIAGIEAREIAALLDMTAHEFAFNALYLDGKGFITNDRASNGGEYHFNAIMLTSAGIDVVEDPVEMDRHVPITPQARTHDRRRGRTRRPLT*

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