Scaffold Ga0114956_1128175

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114956_1128175

Scaffold Ga0114956_1128175

Overview

Basic Information
Taxon OID	3300009446 Open in IMG/M
Scaffold ID	Ga0114956_1128175 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1169
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Maine, USA
Coordinates	Lat. (^o)	44.342	Long. (^o)	-68.065	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013269	Metagenome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114956_11281751	F013269	AGGAG	MVTADTFFLAVRVNDKRGGVRVCVDDHEGSNGFALQLVWPFVVGRVYVVGDLDVRIAGCDPMVEVTFATLLRLTQGLNYDGDLLSQAGHELVFAS*

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