NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114956_1247920

Scaffold Ga0114956_1247920


Overview

Basic Information
Taxon OID3300009446 Open in IMG/M
Scaffold IDGa0114956_1247920 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Maine, USA - Maine_Asex2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameMaine, USA
CoordinatesLat. (o)44.342Long. (o)-68.065Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F088156Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0114956_12479201F088156N/AGASLFQVLGVKGLQRQSSCANWSFDEGCSKSCFPHRGLHWGLFHVFIGKVVPFSSCTNCQHMPALVSVHLIGPRDRHVSKLQ*
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