NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115560_1004616

Scaffold Ga0115560_1004616


Overview

Basic Information
Taxon OID3300009447 Open in IMG/M
Scaffold IDGa0115560_1004616 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110509
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8147
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018725Metagenome / Metatranscriptome233N

Sequences

Protein IDFamilyRBSSequence
Ga0115560_100461610F018725N/AMKTLVKIIATIAVFGGGFFAYQSVNAADITGDAGVSYSDTRTFRGVKQADDTLGVNVGLATSLAEKVSLGISLDSFNALEAGQTNELRTGVSLGYDVSETIGLSVGYTNYDYQSATSNNEIGLGVSVKTLLNPSVLYAMDSDNDSDVAEISVSHTISLNEQFGLTLGGSLGNVDAAADYNYHSLGATINTSVGGADTFVGIALVD
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