NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115560_1071468

Scaffold Ga0115560_1071468


Overview

Basic Information
Taxon OID3300009447 Open in IMG/M
Scaffold IDGa0115560_1071468 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110509
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1477
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022159Metagenome / Metatranscriptome215N
F025231Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0115560_10714681F025231N/AVEIRRNTMEIRETYYELYLDGTLYHEGTLEDCTEYAQRALDDDCAEVYKVTVTEEKVVI*
Ga0115560_10714684F022159N/AMVSMVLAENTNEFITVKFLTKDNEERTYNGRLNVKKYLVGGERGRKAADVLKAHNLIPMFVGKDGEKPKYKSFCLDRVLAMKAGGRHIFAMGSEVE*

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