Scaffold Ga0127391_1003442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0127391_1003442

Scaffold Ga0127391_1003442

Overview

Basic Information
Taxon OID	3300009450 Open in IMG/M
Scaffold ID	Ga0127391_1003442 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3559
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location Name	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025485	Metagenome / Metatranscriptome	201	Y
F031456	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127391_10034424	F025485	N/A	MNNARKFLPIIIGSLVAFIVFWISRKMRKSNTANQERFTILEKAREAKLAKSILKKSENEESPTYSEISA*
Ga0127391_10034427	F031456	N/A	MSQIGSFPASGSAVFNLDFLPEKFLIDSTDAVNQFLTNFSVVTSGVQLMSITDVDRLTALAKFDSGAILSDPSATNISTSSSYLRLATGRINKATTITGTNGVAANLAAYAASTNISNIARRAVEQSINPSANATFDNFEALFFLPTNILRAQITFANGFTDEYTVRELQALYSNYHVADFSGNLQGLICIAADSGAGLISQVVLYNGAGGTTVVLKSDYVEL*

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