Scaffold Ga0114939_10479459

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114939_10479459

Scaffold Ga0114939_10479459

Overview

Basic Information
Taxon OID	3300009455 Open in IMG/M
Scaffold ID	Ga0114939_10479459 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	544
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Ash Meadows Crystal Spring, Nevada
Coordinates	Lat. (^o)	36.42	Long. (^o)	-116.32	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000982	Metagenome / Metatranscriptome	814	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114939_104794591	F000982	GAG	MAPLKLSSSAARLLDHHRLRGRAYPTPKYWDRFYQMLEEEAERRGKTPPPPPMTHALDHEPTDEDKLERLREQVAWADRNSLLHQVQAFFARLPTSCWVHTGK*

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