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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009466 Open in IMG/M |
| Scaffold ID | Ga0126448_1018599 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1679 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Falmouth, Massachusetts | |||||||
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F016142 | Metagenome / Metatranscriptome | 249 | Y |
| F038646 | Metagenome | 165 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0126448_10185991 | F002738 | N/A | MTIDTYGLTFDQYEEFFDKNIRLAARLYLKTCNILNEEGAGHVDFKTILDIYQETVYAANDDCRRYQKSNNPEALKDGDLYNISPTREEIMDEIQSVNAKVEALTDYIGNLVTVTTVGLEGIATTLDDKVD* |
| Ga0126448_10185992 | F038646 | N/A | MTDDILDYARQLVANQPMKLRDHHKYDLEIPSDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKRITAKAYSDPSWVYKLSLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQEDFILTALRSACGSVLSDHDN* |
| Ga0126448_10185993 | F016142 | N/A | NYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTSNATLQNHWADKFIHISDPAKLTALLQSDQTDIGHLVAPDGMRLPNRPIDMGSELDDGSEQKPVLSEPTCSCGSFQRQLSNLSFFQEEIEGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPKDAVSDGRFVLLYTNSGAQAPLGHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |