NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115565_10013605

Scaffold Ga0115565_10013605


Overview

Basic Information
Taxon OID3300009467 Open in IMG/M
Scaffold IDGa0115565_10013605 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110530
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4551
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049948Metagenome / Metatranscriptome146Y
F071661Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0115565_100136051F049948N/ALVVCNRNNFMWSTDMNFLTDMTPTPFLAAIQADIDWQAVGENNNPYSAKSQPEARQAYDDRFDQVRNEWEQFTGGVA*
Ga0115565_100136055F071661AGGMNTKVQVQVPVPITMLSDADILSELNRRQVLIKWARKAIPKPDNRGRSFVSPSCVVEEWDCRK*

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