NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126447_1003438

Scaffold Ga0126447_1003438


Overview

Basic Information
Taxon OID3300009470 Open in IMG/M
Scaffold IDGa0126447_1003438 Open in IMG/M
Source Dataset NameAquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; DNA IDBA-UD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4217
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location NameFalmouth, Massachusetts
CoordinatesLat. (o)41.548517Long. (o)-70.622961Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F006619Metagenome / Metatranscriptome368Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0126447_10034381F006619N/AAPDGMRLPNRPIDMDSELDDGSEQKPVLSEPTCSCGSFQRQLSNLSFFQEEIEGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPKDAVSDGRFVLLYTNSGAQAPLGHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK*
Ga0126447_10034382F038646N/AMTDDILDYARQLIANQPMKLRDHHKYDLEIPSDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKRITAKAYSDPSWVYKLSLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQEDFILTALRSACGSVLSDHDN*
Ga0126447_10034386F001018N/AMTNQITQAKLRDLNVIKLYEHYAALEKSLPLLTPESQELAKAELESCATLRSEKIDRIYYAMASHEDALERIKKEGELITQAKRHHESQLKSLKGLLNYLRRVLPLDTNKITGRNYQFTLVKKKELTVEISTDPEFWHTKERELYCITEEVTTTKRVVLRSMSGEVLSERTEPKTTTKTLPNLDAIRSAYQEGQQLPSGVKVLQEYSVRSKRIFSEPKLDLASSEYPGELLPEDPSAD*
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Biomedical Sciences Research Center "Alexander Fleming"
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