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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009474 Open in IMG/M |
| Scaffold ID | Ga0127390_1019777 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 3m depth; DNA IDBA-UD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1978 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Falmouth, Massachusetts | |||||||
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F022872 | Metagenome | 212 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0127390_10197771 | F022872 | N/A | MSWSIPTRIEEDIISGKAQYRTFQTGVGGQSILPIPSNAYAVIFGYDFSPAGGGITSNNLQSFQPQLNVDILRWFETQQISFYTGTDFFPFIHHVDIDQSGFTLEGFGTNVIQTVVNKPIARQVYITSDKDVTITVGLILDSDITTLNAIPQTNRTPALLTYGGSAQTIATQTDFGPVVSPIQFMQPSPKDYQNFGFGLLPNGASGQVFATPDTARGLYDPSLYLSSLGVNFRDA |
| Ga0127390_10197772 | F000710 | N/A | MIMATNMDISYRQGIRSKGFAITAATGVTQQTLSLSGLAKSFEGLLLSSAFTATPQTVINPAQLRITLTINNDVVIDDDIALHYATPAAGGFSGGFPYFIPIPRRLTGQDTIQLRLVNAAASQSVNVTVWYRNEL* |
| Ga0127390_10197773 | F002287 | N/A | MSQVGKLGYVDSKLGAPSSGQQTTRILFNTIENPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIQLSQFNSSGRLDAFGGLAQQTLSVIVGNQTVVKNLPIHFNQGICGQAFDRLHENGGTRNQSFSADAFVQNEQPVEIRLLTDIVIPPQVAFEVRIESNAGVYGAGAVVCALSGYGKIFSAGSSF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |