NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114932_10005865

Scaffold Ga0114932_10005865


Overview

Basic Information
Taxon OID3300009481 Open in IMG/M
Scaffold IDGa0114932_10005865 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10732
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002249Metagenome578Y
F002507Metagenome553Y
F013522Metagenome270Y
F020260Metagenome225Y
F032820Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0114932_1000586511F020260GAGGMERISELEDLMAEITEEAISVKLDYETSGSNLDSGSVIEIHQDSPLLTNEKEKLGDIAFNIEKKTDV*
Ga0114932_1000586516F002249N/AMIRYGKKYKSYPYTIPVNHKALQHTRIKELQLRMMRWAAYVKDYKPTRNGIGSIVLHKNKWQHRFTFTLRCQRRAGKLTKGELEQLNDYWKIYDYKRLS*
Ga0114932_1000586517F013522AGGAMIKQQILKRIEQLSTLCEETEPTAKELMYMDKLFTQDLIDVDTMYLQVRNEKNSRDEIIDIMKECNWIWKKRMKVKEIGWTEYTNIDRNIEESLRANRKIEAIKLYRQHRIDNGTDCSLRQAKDYIDKLLIKMGLDS*
Ga0114932_100058657F002507GAGMTYYLLLNGDTEKDVIFDTNVLGEESFGVFYPSQGFGLLHKIINEKPELLDEIRIIDDHKKPHTITEFLDNLDKLRIKKA*
Ga0114932_100058659F032820AGGAGMKYYLVDNYDNIVDKIDSVTPGGAEHYFMKRKLLEDKEKFYSVWKIQTKKEYDLQRDAALRKPSSEWWKEEEAYLDLDKP*
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