NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114932_10036556

Scaffold Ga0114932_10036556


Overview

Basic Information
Taxon OID3300009481 Open in IMG/M
Scaffold IDGa0114932_10036556 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3228
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005580Metagenome396Y
F014809Metagenome260Y
F090277Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0114932_100365561F090277N/ATRVNLGFDWSNQGPAEVLSYTIEVDGTGLFIEKTVLTDLNLGFQPKQIEFVIPPNARVRVMATQSANNGAVSCILTGFRL*
Ga0114932_100365566F005580AGGAGMKRTIPHPSVTGMASGLAIASYLNQGPIVSTGMAGISARADGVIKDITDGELGKAFGTLSNNAIKMIGSDSGRKTLVGASLVAMAGAFARKQFPNLKLGGSKLYFRV*
Ga0114932_100365567F014809AGGAGMATTITRTFDSTPTDQTYFSLTDNMSSSNLGNIQVPDGATRISRVDFTFACFNPKGYEVVCRLSGSNMSEQNFTLMGVDGDGTADSGIVNTSGSCDVAFPVTGVNNIDLQVAIQYASGGSATASSGAVTLYFE*
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