NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127411_1105415

Scaffold Ga0127411_1105415


Overview

Basic Information
Taxon OID3300009484 Open in IMG/M
Scaffold IDGa0127411_1105415 Open in IMG/M
Source Dataset NameAquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 12m depth; DNA IDBA-UD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)732
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location NameSiders Pond, Falmouth, Massachusetts
CoordinatesLat. (o)41.548517Long. (o)-70.622961Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077964Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0127411_11054152F077964N/AMKKLIIATALAFLFYPLSALAETAESKSSPPTIQRIAPNSYYYNYNIQEVQKVPEGGGEAETWYQYNYVTIQGKPSKLKVLQAIEAAESSTSTAVVEGVATERTAAQEKLADIAAMTYAQIDTYVENTFSNLSTAQKTALKKLYKVVIAILKQMDLS*
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