NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114925_10435666

Scaffold Ga0114925_10435666


Overview

Basic Information
Taxon OID3300009488 Open in IMG/M
Scaffold IDGa0114925_10435666 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Namenear North Sumatra
CoordinatesLat. (o)1.759Long. (o)96.774Alt. (m)Depth (m)1855
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004912Metagenome / Metatranscriptome419N
F021417Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0114925_104356661F021417N/ATTEYSRGANRENFGDATSEVATLDFNKIRRFDIEDGDSPNVVIEGTGWMCKQGACQDIVKIGISAPRQEEARAIESKRHAIDFIKKACPALPRDR*
Ga0114925_104356662F004912GGCGGVTPTSVVFAEDPSPTVGKYSCSVGNIVGLQTNSQTGTRFAGRIDADVQQKFFVTIEENKQLPEDRCFSADALDELKKLRRGEKPGTNSKANFLDPLMFFTACQAQFRLSTNGSPIDSLYHSDNLNIFRDEFSQFWIKNGLSYIWQFHDLKGNAYVAEGKCEKIN*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.