Scaffold Ga0114925_11277814

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114925_11277814

Scaffold Ga0114925_11277814

Overview

Basic Information
Taxon OID	3300009488 Open in IMG/M
Scaffold ID	Ga0114925_11277814 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	541
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	near North Sumatra
Coordinates	Lat. (^o)	1.759	Long. (^o)	96.774	Alt. (m)		Depth (m)	1855
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001660	Metagenome / Metatranscriptome	655	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114925_112778141	F001660	AGGA	MADPNKYKSLSVKREDWEQLGVLANKTNRTRSTMIGRLIRFFMDNKGVKANGKTNKNS*

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