NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114925_11280903

Scaffold Ga0114925_11280903


Overview

Basic Information
Taxon OID3300009488 Open in IMG/M
Scaffold IDGa0114925_11280903 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Namenear North Sumatra
CoordinatesLat. (o)1.759Long. (o)96.774Alt. (m)Depth (m)1855
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080292Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0114925_112809031F080292N/ASDAEHGEPAGEPHAGDRHVHPTKEEDVAEYHGQLLEQLRHVEGNINKFAIQNYAASGAVVLAYLADKAPLWATIIIVALLNINFAIAIFVQAARVDKLFTMHCIVRNFWLDNRPELLRRLQANEISNEVLATTTFPRWVAIAILLAQFLPILFLLLVAPFNEYMAYQEGG*

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