NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127412_10000904

Scaffold Ga0127412_10000904


Overview

Basic Information
Taxon OID3300009492 Open in IMG/M
Scaffold IDGa0127412_10000904 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2509
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameUS Atlantic Margin
CoordinatesLat. (o)37.5409Long. (o)-74.10211667Alt. (m)Depth (m).06 to .08
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0127412_100009042F038646N/AMNDSDDILEYARQLAMQPPMTPPKDHDYRLQISEDTHWELVKLAAELRMDPESYAEEILNMHAEDAVSKRIVAKAYNDPSWVAKLNLECVDEPDGTMSIHIEWDEKDPDLQYWTNLGAKGQENFILTALRSACNDVLSTHVD*
Ga0127412_100009043F002333N/AMSTQLLQQELNCAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYTHALGHLTSNATLQTHWADKFIHVTEQQKVVSLLQSDQTDLGHLVAPDGLRLPNRPIDLDSDMEDQESSVSPVHAEPYCSCGSFQRQLLNLSEFQAEIEGFKPWCIHLSWFGKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNSGAQSPLSHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKA*
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