Scaffold Ga0115571

Basic Information
Taxon OID	3300009495 Open in IMG/M
Scaffold ID	Ga0115571_1003642 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009495 Open in IMG/M

Scaffold ID

Ga0115571_1003642 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9671
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (14.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9671

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (14.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F015342	Metagenome / Metatranscriptome	255	Y
F025285	Metagenome / Metatranscriptome	202	Y
F039045	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_100364217	F015342	N/A	MSVAANMPARNVKGNVQAQDKILYVANKLGLSSLKYMQATTRVIYDQSVTAATQHTLFEGAAARSFPLTNLGANGNQFQVDEALLVEKIAFFIPIDESGQNFQNGGQTSVKFDLIIGNKTVMKDVVIEQAGQQAFYNDGSTPSYVLDLEGVGILIPPQVEFKIQAKSLETRGRAAVSQRLGMYLFGTGVLLNFNTSI*
Ga0115571_100364218	F025285	N/A	MSQVGKLNMVNSKLGATMPGQQTTRYIYDSVTAVAGQTNFNLFQTFAGKTDLQSNLTTNKLDSSESMVIKSLFISSNFSQFLTGHMNLNIIVGNQVVLKDFNPAFNASNRGVSFDRLHSGTNLPWLIEVRLLTDIVIPPQVNFKATLELAEGGTLAGENITLGLKGYGTIFSAGSTF*
Ga0115571_100364219	F000710	N/A	MNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILLTSTTSAAPGTIVDPTQLRITLVINNDVVIDDDVAYHYAISATGGFSGGFPFFIPFPRRLTGQDTILLKVTNSSGASQILNTTVYYRNEI*
Ga0115571_100364220	F039045	N/A	MSIAIPTLIEKDIRCGKARYSTYQTGMGGQSVLVVPDNSYIIIFGYDYSPAGGGLVRTITNGSVGAQSLLTTAGLRAFETQQISFYTGQAFHPFIHHVNCANQIVINNSNPEGVATDIRINSEIDNTPQNRSTYIISNRSVAITVGLVQRVELNSAAAIPVTDKTPGSLTYGGSAATPNVESIYSSNLANPPSQVQPSLKQFQDYGLGGVPGNAQDQAFAVPDQTDGLIEPSQWLQDVFDLTFREAAACNYFLNVHYALYTNTTPEALG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115571_1003642

Overview

Ecosystem & Geography

Associated Families

Sequences