NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115571_1033216

Scaffold Ga0115571_1033216


Overview

Basic Information
Taxon OID3300009495 Open in IMG/M
Scaffold IDGa0115571_1033216 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2500
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F019836Metagenome / Metatranscriptome227Y
F037230Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0115571_10332161F019836N/AMQKAELELPVKQFHRLYDLLGDLIDYEAEINVFNMENNDIEFLEDIRHELFNQIPDEKTYTDYAITGRSSNPSIQAGKLYKITEKTSKHGFKLEVEDGEVIYCLFKDCAFLNGRDWTIINVED*
Ga0115571_10332163F037230N/AMKNLTEKYVNIDWSGICSDFDLDHGDITPDQSFEMDRLLGNINEVLHEFIEQNKPKAHIGQATLTNTEHNVLMVALDHMYEHLSDLKCDLYYSEEENTNLKRIDAVNSLKKLFKK*
Ga0115571_10332166F005129N/AMKYKVKIAEVNKSINLMHHSYIDLGLFAVNATTHTFLYSAVKTDWGADINDTELEFELNGKRCKYVGFKELYTQLYGNSFVTWEADLIRQIEEEVAKQIVKEYPGTDVNY*
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