NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115570_10027600

Scaffold Ga0115570_10027600


Overview

Basic Information
Taxon OID3300009496 Open in IMG/M
Scaffold IDGa0115570_10027600 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3265
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F058166Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0115570_100276001F002221AGGAMSNYLEESLKDKLKELRIYELETKVKWGNRRRIFKMVGVDFEIKFLKGEQILKTSLQDDPPKKQIAMVEMMLRAYEQLNIKCEESGYIMIQPNAKCFTFDRKTALVCDTDDDKPVLELIHKDEKDIMIFSIEELLRCLPND
Ga0115570_100276003F058166AGGAGMDILGGMSNSNGDSKDYYLAFKTADQQFFVNGKTPIEFKYLQLDPATFKSGWGRYAGEYQYQWDSKFGQASPKPAEDWKRAFSCVVMPYGHDHALIWSRFTFAESSAFNKILSSFWNQMDANSDSLPVVEYKGSKEIQVGIGRSSELSFEFSKFAPRFANFDIPAFYDKDDDAVEDTFKSPNDGLADKVQEMVDKNELTDDDIPF*
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