NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115569_10095154

Scaffold Ga0115569_10095154


Overview

Basic Information
Taxon OID3300009497 Open in IMG/M
Scaffold IDGa0115569_10095154 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1515
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F072209Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0115569_100951543F009856N/AMKYWFDTDDAQRWGLPAAAVLAHLKYWIDRNTSAGEEPCMTQSISKMQSHLSFLTFDQIRRALSKLEKDGVIYRQGNGFDRRHTYCLAEMPQGRGEIATTMGQDCHNDVAPLPQVHIETNTSKRTKKDAREELEYQRPTEEEVIEYMEDRGAHELAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNDRRKGFNPAGFTPDGLKDFIANG*
Ga0115569_100951544F072209AGGMVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFVAFKLEEFALVFEGIKRNKFGPIYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHSGTREERKAILLTVEDLIDLGQIKPPE*
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