NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115569_10373066

Scaffold Ga0115569_10373066


Overview

Basic Information
Taxon OID3300009497 Open in IMG/M
Scaffold IDGa0115569_10373066 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070120Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0115569_103730662F070120N/AMKTLKDVAKIYKDKALTAINPGVPYNKYKTGSSKAYKTGKMYKDVASRNRIQTMFQKDKKGKITFTFNFSQPDYAKYVHDGTRYMKARPFAKLAAESPEFIKAKDELVGEEAKLVLDGIFEELGTMWESGGDNLSVT*
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