NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114930_10009378

Scaffold Ga0114930_10009378


Overview

Basic Information
Taxon OID3300009499 Open in IMG/M
Scaffold IDGa0114930_10009378 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7479
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameDenmark: Anholt
CoordinatesLat. (o)56.62Long. (o)11.67Alt. (m)Depth (m)31
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046170Metagenome / Metatranscriptome151Y
F074370Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114930_100093784F046170AGGAGGMIRIEDFGEIAYGGAVTLTEWWDNKRIDEGKIGPKDVFKKASFYTYLGVGLTATLMSVFGWMRRYERWEEHVSHGFLYDLPRFAMGLTKALGAGGKRGSDSSAVEQAQRILNEKMKAKALGSGRAADRSYQREFESVAPYAF*
Ga0114930_100093789F074370AGGGGGMADESAKKLAEAKKKMFGAQQPSGKIIILVKGDTLFKSTDPKVEVRQLE*

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