Scaffold Ga0114951_10022031

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114951_10022031

Scaffold Ga0114951_10022031

Overview

Basic Information
Taxon OID	3300009502 Open in IMG/M
Scaffold ID	Ga0114951_10022031 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4277
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium → Marinobacterium litorale	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.2	Long. (^o)	25.1	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048071	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_100220312	F048071	GGA	MAFEQKPNSGAMFRNTQKKSDNHPDMRGDVHLDKTFLINMMDKSKGALVKISLSGWSKESAAGKKYLSLSASEPYEKPKSDDDLPY*

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