 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009502 Open in IMG/M |
| Scaffold ID | Ga0114951_10050649 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2508 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Lake Alinen Mustajarvi | |||||||
| Coordinates | Lat. (o) | 61.2 | Long. (o) | 25.1 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035367 | Metagenome | 172 | Y |
| F063278 | Metagenome | 129 | N |
| F063304 | Metagenome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114951_100506492 | F035367 | GGA | MPAAAKWMFILVLNAVLCGFFGLGIAVLHFLWLEYATVRWPKVRYTDDYQTSFALACAAAVFVLTTLRQIKTRLESKSLRPGEIGFILIFAAIVMLGLTPVPGSNFPQYLYEMNYPGKKDTSKEDPKIEEEAKPLKLNRDYP* |
| Ga0114951_100506493 | F063304 | N/A | MRLNNSTPDRDVSPHIYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDISEMQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPGNAYSAFAQRTALIGIQPHDWVKRWVESQRDLFRNKPSDAGYLRMAQRLSGARPLEPGKGDAFQRALATFLDGIAASTSQSHAVVVQSSLLETFAQAIRHQARDLGLDRPAVPPPAMAIS* |
| Ga0114951_100506494 | F063278 | GGA | MHRFDSQTHNAMKERYLIIGFEPPTRRISLDSEWAESATDAMKAVAGMRKAADVLLAWTPGQMRLMADLLAAMTPQQIAFNRRTAELEERAFRASQMAPPPVRTAGPQHQPFLVISYNPVTEAVHLDTELSDSPDAALRSVAGIRGRAHVILAFTPEQLREMAANLEGLTAEQMARNRTAAEQEEKTFNAELAARQ* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |