Scaffold Ga0114951_10076901

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114951_10076901

Scaffold Ga0114951_10076901

Overview

Basic Information
Taxon OID	3300009502 Open in IMG/M
Scaffold ID	Ga0114951_10076901 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1942
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.2	Long. (^o)	25.1	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007689	Metagenome / Metatranscriptome	346	Y
F021920	Metagenome / Metatranscriptome	216	Y
F085063	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114951_100769011	F085063	AGGAG	MKPRIASRGPEIDMEKCVQQAGGGRYDMVLIGAQRLRELKRIHREDTSRYVTCVDSLHEIQTGQVNLVDYLAKVK*
Ga0114951_100769012	F021920	AGG	MAKPQQTASELSRTLAGKWSKSEKRADISRQMMASKLRTHAALKVFKQGIFLNK*
Ga0114951_100769013	F007689	AGG	MKLYEAVVKGPDGKEFKDRVGAEDAYEARKLLQQRHGPRAVPYLPHMIPS*

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